Dataset Name Array Type Tissue Total samples Num of classes Samples per class Classes Total Probes Remaining Probes
Armstrong-2002-v1 Affymetrix Blood 72 2 24, 48 ALL, MLL 12582 1081
Armstrong-2002-v2 Affymetrix Blood 72 3 24, 20, 28 ALL, MLL, AML 12582 2194
Bhattacharjee-2001 Affymetrix Lung 203 5 139, 17, 6, 21, 20 AD, NL, SCLC, SQ, COID 12600 1543
Chowdary-2006 Affymetrix Breast, Colon 104 2 62, 42 B, C 22283 182
Dyrskjot-2003 Affymetrix Bladder 40 3 9, 20, 11 T2+, TA, T1 7129 1203
Golub-1999-v1 Affymetrix Bone Marrow 72 2 47, 25 ALL, AML 7129 1877
Golub-1999-v2 Affymetrix Bone Marrow 72 3 38, 9, 25 ALL-B, ALL-T, AML 7129 1877
Gordon-2002 Affymetrix Lung 181 2 31, 150 MPM, AD 12533 1626
Laiho-2007 Affymetrix Colon 37 2 8, 29 Serrated CRC, conventional CRC 22883 2202
Nutt-2003-v1 Affymetrix Brain 50 4 14, 7, 14, 15 CG, CO, NG, NO 12625 1377
Nutt-2003-v2 Affymetrix Brain 28 2 14,14 CG,NG 12625 1070
Nutt-2003-v3 Affymetrix Brain 22 2 7,15 CO, NO 12625 1152
Pomeroy-2002-v1 Affymetrix Brain 34 2 25,9 CMD,DMD 7129 857
Pomeroy-2002-v2 Affymetrix Brain 42 5 10, 10, 10, 4, 8 MD, Mglio, Rhab, Ncer, PNET 7129 1379
Ramaswamy-2001 Affymetrix Multi-tissue 190 14 11, 10, 11, 11, 22, 10, 11, 10, 30, 11, 11,11, 11, 20 BR, PR, LU, CR, LY, ML, BL, UT, LE,
RE, PA, OV, ME, CNS
16063 1363
Shipp-2002-v1 Affymetrix Blood 77 2 58,19 DLBCL, FL 7129 798
Singh-2002 Affymetrix Prostate 102 2 50, 52 N, PR 12600 339
Su-2001 Affymetrix Multi-tissue 174 10 26, 8, 26, 23,12, 11, 7, 27, 6, 28 PR, BL, BR, CO, GA, KI, LI, OV, PA, LU 12533 1571
West-2001 Affymetrix Breast 49 2 25,24 ER+, ER- 7129 1198
Yeoh-2002-v1 Affymetrix Bone Marrow 248 2 43, 205 T-ALL, B-ALL 12625 2526
Yeoh-2002-v2 Affymetrix Bone Marrow 248 6 15, 27, 64, 20, 79, 43 BCR-ABL, E2A-PBX1, Hyperdiploid>50, MLL,
TEL-AML1, T-ALL
12625 2526
Alizadeh-2000-v1 Double Channel Blood 42 2 21, 21 DLBCL1, DLBCL2 4022 1095
Alizadeh-2000-v2 Double Channel Blood 62 3 42, 9, 11 DLBCL, FL, CLL 4022 2093
Alizadeh-2000-v3 Double Channel Blood 62 4 21, 21, 9, 11 DLBCL1, DLBCL2, FL, CLL 4022 2093
Bittner-2000 Double Channel Skin 38 2 19, 19 ML1, ML2 8067 2201
Bredel-2005 Double Channel Brain 50 3 31, 14, 5 GBM, OG, A 41472 1739
Chen-2002 Double Channel Liver 179 2 104, 75 HCC, liver 22699 85
Garber-2001 Double Channel Lung 66 4 17, 40,4, 5 SCC, AC, LCLC, SCLC 24192 4553
Khan-2001 Double Channel Multi-tissue 83 4 29, 11, 18, 25 EWS, BL, NB, RMS 6567 1069
Lapointe-2004-v1 Double Channel Prostate 69 3 11, 39, 19 PT1, PT2, PT3 42640 1625
Lapointe-2004-v2 Double Channel Prostate 110 4 11, 39, 19, 41 PT1, PT2, PT3, Normal 42640 2496
Liang-2005 Double Channel Brain 37 3 28, 6, 3 GBM, ODG, normal 24192 1411
Risinger-2003 Double Channel Endometrium 42 4 13, 3, 19, 7 PS, CC, E, N 8872 1771
Tomlins-2006-v1 Double Channel Prostate 104 5 27, 20, 32, 13, 12 EPI, MET, PCA, PIN, STROMA 20000 2315
Tomlins-2006-v2 Double Channel Prostate 92 4 27, 20, 32, 13 EPI, MET, PCA, PIN 20000 1288